#!/bin/bash

if [[ $# -ne 2 ]]; then
    echo "The format is as follows:"
    echo "bash trf-4.09.1.sh buildpath installpath"
    echo ":param buildpath: 应用构建绝对路径"
    echo ":param installpath: 应用安装绝对路径"
    exit 1
fi

[[ ! "$1" =~ ^/.* || ! -d "$1" || "$1" = "/" ]] &&  echo "请输入正确的构建路径" && exit 1
[[ ! "$2" =~ ^/.* || ! -d "$2" || "$2" = "/" ]] &&  echo "请输入正确的安装路径" && exit 1

buildpath=$1
installpath=$2
[[ "$buildpath" =~ .*/$ ]] && buildpath=${buildpath%/*}
[[ "$installpath" =~ .*/$ ]] && installpath=${installpath%/*}
[[ "$buildpath" == "$installpath" ]] && echo "构建路径与安装路径需为不同路径" && exit 1
set -e
yum install -y wget tar environment-modules

wget -t 0 -c -P $buildpath https://github.com/Benson-Genomics-Lab/TRF/archive/refs/tags/v4.09.1.tar.gz -O $buildpath/trf-4.09.1.tar.gz
tar -xzvf $buildpath/trf-4.09.1.tar.gz -C $buildpath && rm -rf $buildpath/trf-4.09.1.tar.gz

cd $buildpath/TRF-4.09.1
mkdir build && cd build
CC=clang CXX=clang++ FC=flang F77=flang F90=flang ../configure --prefix=$installpath/trf-4.09.1
make -j$(nproc) && make install

cat>"$installpath/trf-4.09.1/trf_modulefiles"<<EOF
#%Module1.0
conflict trf
variable modfile [file normalize [info script]]
proc getModulefileDir {} {
    variable modfile
        set modfile_path [file dirname \$modfile]
            return \$modfile_path
    }
set pwd [getModulefileDir]
set TRF \$pwd
setenv TRF \$TRF
prepend-path PATH \$TRF/bin
EOF

rm -rf $buildpath/ncbi-blast-2.13.0+-src

